363 fewer sets in 4DN-only Data.
Included Properties
Data Type
Project
Lab
Experiment Category
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Set Type
Status
Commendations
Warnings
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
CUT&RUN
H1-hESC (Tier 1)
H2A.Z - H1-ESC
Active Motif 39113
Target
H2A.Z protein
CUT&RUN
K562 (Tier 2)
H3K4me3 - K562
Active Motif 39159
Target
H3K4me3
in situ Hi-C
olfactory receptor cell
Hi-C on hamster OSNs
inactivated SARS-Cov2 infected serum - 12.5h
Enzyme
MseI
in situ Hi-C
olfactory receptor cell
Hi-C on hamster OSNs
mock serum
Enzyme
MseI
in situ Hi-C
olfactory receptor cell
Hi-C on hamster OSNs
SARS-Cov2 infected - 10 dpi
Enzyme
MseI
in situ Hi-C
olfactory receptor cell
Hi-C on hamster OSNs
SARS-Cov2 infected - 1 dpi
Enzyme
MseI
BLISS
HEK293 (Tier 2)
BLISS on HEK293 cells after multi-target Crispr
no treatment control
-
BLISS
HEK293 (Tier 2)
BLISS on HEK293 cells after multi-target Crispr
caged AluGG cgRNA (light activated) - 30 min light
-
BLISS
HEK293 (Tier 2)
BLISS on HEK293 cells after multi-target Crispr
caged AluGG cgRNA (light activated) - 10 min light
-
BLISS
HEK293 (Tier 2)
BLISS on HEK293 cells after multi-target Crispr
caged AluGG cgRNA (light activated) - no light
-
BLISS
HEK293 (Tier 2)
BLISS on HEK293 cells after multi-target Crispr
3 h after Cas9-AluGG mgRNA
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
no treatment control
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
photocleavable mgRNA - no light control
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
photocleavable mgRNA - 4 h post light
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
photocleavable mgRNA - 2 h post light
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
photocleavable mgRNA - 1 h post light
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
light activated caged mgRNA - 30 minute post light
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
light activated caged mgRNA - 10 minute post light
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
light activated caged mgRNA - no light control
-
ATAC-seq
HEK293 (Tier 2)
ATAC-Seq on HEK293 cells after multi-target Crispr
regular AluGG mgRNA - 3h
-
RNA-seq
olfactory epithelium
RNA-seq on hamster olfactory epithelium
inactivated SARS-Cov2 infected serum - 12.5h
-
RNA-seq
olfactory epithelium
RNA-seq on hamster olfactory epithelium
SARS-Cov2 infected - 10 dpi
-
single cell RNA-seq
olfactory receptor cell
single cell RNA-seq on hamster olfactory sensory neurons
SARS-Cov2 infected - 10 dpi
-
single cell RNA-seq
olfactory receptor cell
single cell RNA-seq on hamster olfactory sensory neurons
SARS-Cov2 infected - 1 dpi
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, NcoI digestion
Enzyme
NcoI