Included Properties
Data Type
Dataset
Organ/System
Modifications
Set Type
Warnings
16 Common Properties
Project
4DN
Lab
Christine Disteche, UW
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Mouse
Sample Type
immortalized cells
Sample Tier
Unclassified
Sample Category
Other
Sample
Patski
Tissue Source
kidney
Publication
Bonora G et al. (2018) PMID:29654302
Treatments
No value
Assay Details
Enzyme: DNaseI
Center
NOFIC - Shendure
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 37 kb including Ds-TR gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr generated inversion of CTCF site in GRCm38:X:75674046-75674952
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr inversion of 44 kb including Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 44 kb including Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 127 kb 'hinge' region near Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
WT
Enzyme
DNaseI
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