28 fewer sets in 4DN-only Data.
Included Properties
Data Type
Lab
Dataset
Sample Category
Publication
Assay Details
Center
Set Type
Warnings
13 Common Properties
Project
External
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
immortalized cells
Sample Tier
Unclassified
Sample
GM12878
Organ/System
immune system
Tissue Source
B-lymphocyte
Modifications
No value
Treatments
No value
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
Selvaraj et al Nature Biotech 2013
Enzyme
HindIII
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 10 min, 37C
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 5 min, 37C
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 1 min, 37C
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 10 min, RT
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 5 min, RT
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 crosslinking titration - 1% FA, 1 min, RT
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (3 day protocol)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dUTP (Tri-Link)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with HindIII and bio-dATP
Enzyme
HindIII
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with NcoI and bio-dCTP (lower ligation volume)
Enzyme
NcoI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (Tethered HiC, lower ligation volume)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (Tethered HiC)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with NcoI and bio-dCTP (Tethered HiC, high ligation volume)
Enzyme
NcoI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with NcoI and bio-dCTP
Enzyme
NcoI
Dilution Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
dilution Hi-C on GM12878 with MspI and bio-dCTP
Enzyme
MspI
Dilution Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
dilution Hi-C on GM12878 with NcoI_MspI_BspHI and bio-dUTP
Enzyme
NcoI_MspI_BspHI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (in agar plugs, w/out crosslinking)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (w/out crosslinking)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with DpnII and bio-dATP
Enzyme
DpnII
Dilution Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
dilution Hi-C on GM12878 with NcoI and bio-dCTP
Enzyme
NcoI
Dilution Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
dilution Hi-C on GM12878 with HindIII and bio-dCTP
Enzyme
HindIII
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (pellet and supernatant protocol)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dATP (in agar plugs)
Enzyme
MboI
in situ Hi-C
GM12878
Hi-C on GM12878 cells - protocol variations
in situ Hi-C on GM12878 with MboI and bio-dCTP
Enzyme
MboI