Included Properties
Data Type
Dataset
Sample Tier
Sample Category
Sample
Publication
Assay Details
Set Type
Warnings
13 Common Properties
Project
4DN
Lab
Job Dekker, UMMS
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
in vitro differentiated cells
Organ/System
endoderm
Tissue Source
definitive endoderm
Modifications
No value
Treatments
No value
Center
NOFIC - Dekker
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+EGS, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+EGS, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+EGS, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+DSG, HindIII
Enzyme
HindIII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+DSG, DpnII
Enzyme
DpnII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde+DSG, DdeI
Enzyme
DdeI
in situ Hi-C
H1-hESC (Tier 1) differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DpnII, H1-DE (Tier 1)
Enzyme
DpnII
in situ Hi-C
H1-hESC differentiated to definitive endoderm
Hi-C on H1-DE cells - protocol variations
Formaldehyde, DpnII
Enzyme
DpnII
- fin -