Included Properties
Data Type
Dataset
Sample Tier
Sample
Organ/System
Publication
Assay Details
Set Type
Commendations
Warnings
12 Common Properties
Project
4DN
Lab
Job Dekker, UMMS
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
immortalized cells
Sample Category
HFF (c6 or hTERT)
Tissue Source
skin fibroblast
Modifications
No value
Treatments
No value
Center
NOFIC - Dekker
Status
Released
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde, DpnII
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde, DdeI
Enzyme
DdeI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+EGS, HindIII
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+EGS, DpnII
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+EGS, DdeI
Enzyme
DdeI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, HindIII
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DpnII
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI
Enzyme
DdeI
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DpnII, HFFc6 (Tier 1)
Enzyme
DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI and DpnII, HFFc6 (Tier 1)
Enzyme
DdeI and DpnII
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Formaldehyde+DSG, DdeI, HFFc6, (Tier 1)
Enzyme
DdeI
in situ Hi-C
HFFc6 (Tier 1)
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFFc6 (4DN Tier1 clone) with 4DN cell culture SOP.
Enzyme
DpnII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme NcoI - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
NcoI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF-hTERT cells grown on beads
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - in situ Hi-C on HFF cells grown on plate
Enzyme
HindIII
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme MboI - in situ Hi-C on HFF cells grown on beads
Enzyme
MboI
in situ Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme DpnII - in situ Hi-C on HFF cells grown on beads
Enzyme
DpnII
Dilution Hi-C
HFF-hTERT
Hi-C on HFF cells - protocol variations
Enzyme HindIII - Dilution Hi-C on cells cultured prior to 4DN SOP
Enzyme
HindIII
- fin -