Data Browser
Filter & browse experiments

58 fewer sets in 4DN-only Data.

Included Properties

Data Type
  • ExperimentSetReplicate58
    • Lab
    Dataset
  • Hi-C on RAD21-AID tagged HCT-11658
    • Organ/System
    Publication
    Treatments
    Center
    Set Type
  • Replicate58
    • Warnings
    13 Common Properties
     Project
    External
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Tier 2
     Sample
    HCT116 with Crispr generated mClover and AID-tagged RAD21
     Tissue Source
    colon
     Modifications
    No value
     Assay Details
    Enzyme: MboI
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES4KDIQNN
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 60 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNES7RDRS69
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 40 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESCOJ3ADI
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 20 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESJV9TH8Q
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNES3QAGOZZ
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    no auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESD117NVX
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 1440 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESLLMJ3JO
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 1080 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNES64ITOWM
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 360 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESNGDNQSG
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    240 min auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESD6N2Y6L
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    60 min auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESFPM1OFO
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    40 min auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNES7N8J8KG
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    20 min auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESOGIV7NG
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    6h auxin treatment and 180 min withdrawal
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESOQTEWX8
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    cells arrested in G1/S phase, no auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESMLKX1ZM
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    cells arrested in G1/S phase, 6h auxin treatment
    Enzyme
    MboI
    Erez Lieberman Aiden, BCM
    4DNESI9RVI9Y
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    no replication
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESJ5Y5ZN8
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    no ATP
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESKZ1WYCN
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    no ATP
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESKY5IGMT
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    no transcription
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESWSTOQ92
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted, no replication
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNES51DMKBB
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted, no ATP
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESHDMG1LU
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted, no ATP
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESTHU1G8W
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted, no transcription
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESG1W727L
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted, no transcription
    Enzyme
    MboI
    Rafael Casellas, NIH
    4DNESHN4FT5O
    in situ Hi-C
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Hi-C on RAD21-AID tagged HCT-116
    RAD21-depleted and reintroduced for 60 min, no replication
    Enzyme
    MboI
    Rafael Casellas, NIH