5 fewer sets in 4DN-only Data.
Included Properties
Data Type
Dataset
Sample Type
Sample Category
Sample
Set Type
Warnings
15 Common Properties
Project
External
Lab
Giacomo Cavalli, UM
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Mouse
Sample Tier
Unclassified
Organ/System
No value
Tissue Source
stem cell
Publication
Bonev B et al. (2017) PMID:29053968
Modifications
No value
Treatments
No value
Assay Details
Enzyme: DpnII
Center
External
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
mESC line with Oct4-GFP
Hi-C on mESC during neural differentiation
control cells, selected for G0G1, but not GFP on Oct4-GFP cells
Enzyme
DpnII
in situ Hi-C
mESC line with Oct4-GFP
Hi-C on mESC during neural differentiation
control cells, selected by Oct4-GFP+, but not GOG1 on Oct4-GFP cells
Enzyme
DpnII
in situ Hi-C
mESC line with Oct4-GFP
Hi-C on mESC during neural differentiation
control cells, unsorted Oct4-GFP cells
Enzyme
DpnII
in situ Hi-C
46C with Sox1-GFP
Hi-C on mESC during neural differentiation
G0G1 neural progenitors cells (FACS sorted, Sox1-GFP+)
Enzyme
DpnII
in situ Hi-C
mESC line with Oct4-GFP
Hi-C on mESC during neural differentiation
G0G1 mESCs (FACS sorted, Oct4-GFP+)
Enzyme
DpnII
- fin -