ExperimentSetReplicate

ExperimentSet4DNES18BMU79
released
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HiC from conditional OMP-Cre; Ldb1-KO mature olfactory sensory neurons

   March 22nd, 2018 at 6:42pm
Source Publication
LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Monahan K, Horta A, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES18BMU79
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIC5AHBPV
533.04m
48.139%
15.423%
36.438%
Experiment
4DNEXVJSLZI5
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIC2O325X
320.14m
48.32%
15.833%
35.847%
Experiment
4DNEXH98PC96
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIPWEWCY3
212.91m
47.867%
14.805%
37.328%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES18BMU79
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIVPAXJO8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXVJSLZI5
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFI3CS19HE
634.35m
14.265%
21.781%
3.94%
9.547%
0.099%
Experiment
4DNEXH98PC96
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIAJM3JGP
457.05m
16.667%
22.609%
5.05%
9.091%
0.095%