ExperimentSetReplicate

ExperimentSet4DNES1982GQ7
released
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Replicates of input control ChIP-seq on Sox2 tagged F123 ES cells with 6 synthetic non-boundary CTCF sites in between Sox2 and its SE

   August 13th, 2020 at 6:16pm
Source Publication
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Huang H, Zhu Q, et al., Nature genetics 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Experiment Type(s) 
ChIP-seq
Modification Type 
RMCE
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXVGSNOG4
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
4DNFI96Z3C5F
read positions (bed)
22.29 MB
Experiment
4DNEX2XNK88Q
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
4DNFIXQBGKRY
read positions (bed)
91.8 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXVGSNOG4
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
Read Positions (bed)
4DNFI96Z3C5F
0.61
0.58
1.33m
Experiment
4DNEX2XNK88Q
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
File
Read Positions (bed)
4DNFIXQBGKRY
0.91
0.9
5.48m