ExperimentSetReplicate

ExperimentSet4DNES1DX47C5
released
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RNA FISH of Prdx2 and Slc4a1 intronic regions on 24h differentiated cells treated for 60min with 300nM triptolide

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:11:102348820-102365281 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:11:102348820-102365281 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXYCNJ2NO
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIBJLGP2L
csv
21.82 kB
File
4DNFIK8S6KH1
coordinates (csv)
4.17 kB
File
4DNFINCPZKV8
csv
25.1 kB
File
4DNFI5SJGF7R
coordinates (csv)
5.54 kB
Experiment
4DNEXDHKIWQX
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIRFU89QE
csv
21.71 kB
File
4DNFI6DHJJCH
coordinates (csv)
3.94 kB
File
4DNFIECP59UA
csv
32.2 kB
File
4DNFIV4UUIP7
coordinates (csv)
8.58 kB
Experiment
4DNEXGTSZ9RB
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIRJ7T6KG
csv
29.66 kB
File
4DNFIJBB6FKX
coordinates (csv)
6.36 kB
File
4DNFI2831B67
csv
36.86 kB
File
4DNFI7G8F547
coordinates (csv)
10.17 kB