ExperimentSetReplicate

ExperimentSet4DNES1H2O6N7
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Replicates of dilution Hi-C on GM18486

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM18486
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES1H2O6N7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINUA4ESG
536.91m
41.262%
18.282%
40.457%
Experiment
4DNEX1GEQHOG
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18486 with HindIII
File
Contact List-replicate (pairs)
4DNFI5DQXQDA
274.08m
45.086%
18.701%
36.213%
Experiment
4DNEXZ2QLOQX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18486 with HindIII
File
Contact List-replicate (pairs)
4DNFIH5S46PF
262.82m
37.274%
17.844%
44.882%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES1H2O6N7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI7N72M2A
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1GEQHOG
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18486 with HindIII
File
Alignments (bam)
4DNFIFSE3KWW
415.93m
11.493%
9.093%
9.966%
3.553%
0.338%
Experiment
4DNEXZ2QLOQX
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18486 with HindIII
File
Alignments (bam)
4DNFIF2MMFDH
422.12m
11.101%
8.879%
12.898%
4.859%
0.272%