ExperimentSet4DNES1ONB8TD
released
August 7th, 2019 at 5:53pm
Source Publication
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.
Zhang Y, Li T, et al., Nature genetics 2019
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
in vitro differentiated cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: MboI
10 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEX8AI2PPD
Bio Rep 1, Tec Rep 1
in situ Hi-C on H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiogenic mesoderm with MboIExperiment
4DNEXC8ZU976
Bio Rep 2, Tec Rep 1
in situ Hi-C on H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiogenic mesoderm with MboIExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8AI2PPD
Bio Rep 1, Tec Rep 1
in situ Hi-C on H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiogenic mesoderm with MboIExperiment
4DNEXC8ZU976
Bio Rep 2, Tec Rep 1
in situ Hi-C on H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiogenic mesoderm with MboI