ExperimentSetReplicate

ExperimentSet4DNES1R1I7KR
released
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Replicates of input control ChIP-seq on Sox2 tagged F123 ES cells - control line

   August 13th, 2020 at 6:16pm
Source Publication
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Huang H, Zhu Q, et al., Nature genetics 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F123-CASTx129 with Sox2 tags
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXYKJV7AK
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags
File
4DNFID598JQQ
read positions (bed)
223.33 MB
Experiment
4DNEXS7AS6A3
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags
File
4DNFIWLGMH3I
read positions (bed)
66.12 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXYKJV7AK
Bio Rep 1, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags
File
Read Positions (bed)
4DNFID598JQQ
0.87
0.87
13.43m
Experiment
4DNEXS7AS6A3
Bio Rep 2, Tec Rep 1
ChIP-seq on F123-CASTx129 with Sox2 tags
File
Read Positions (bed)
4DNFIWLGMH3I
0.66
0.63
3.98m