ExperimentSetReplicate

ExperimentSet4DNES1YEE93B
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RNA FISH of Prdx2 and Slc25a37 intronic regions on 24h differentiated cells treated for 60min with 10nM flavopiridol

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX5MX28B2
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIXRYT3D9
coordinates (csv)
6.63 kB
File
4DNFI7NAROKB
csv
25.15 kB
File
4DNFIZON5FYR
coordinates (csv)
6.21 kB
File
4DNFIDPO1GUX
csv
23.21 kB
Experiment
4DNEXEPIE67W
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIU3771HI
coordinates (csv)
11.07 kB
File
4DNFITQQQ625
csv
41.76 kB
File
4DNFIHHXG54R
coordinates (csv)
8.75 kB
File
4DNFIZGLDFU9
csv
32.41 kB
Experiment
4DNEXOX9IYUX
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFID6G49XB
coordinates (csv)
8.23 kB
File
4DNFIWGT8VYR
csv
30.39 kB
File
4DNFINSY2W4R
coordinates (csv)
7.03 kB
File
4DNFI4DQYKIV
csv
24.74 kB