ExperimentSetReplicate

ExperimentSet4DNES21NPLZU
released
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HiC experiment done on T47D

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
T47D
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES21NPLZU
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI864X1JK
165.45m
39.709%
19.014%
41.277%
Experiment
4DNEX6DNUA7J
Bio Rep 1, Tec Rep 1
Dilution Hi-C on T47D with HindIII
File
Contact List-replicate (pairs)
4DNFIBXVKLYT
78.35m
40.652%
19.869%
39.479%
Experiment
4DNEX7X3XBWY
Bio Rep 2, Tec Rep 1
Dilution Hi-C on T47D with HindIII
File
Contact List-replicate (pairs)
4DNFIO5MTMI8
87.1m
38.86%
18.244%
42.895%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES21NPLZU
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIH77QBT5
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX6DNUA7J
Bio Rep 1, Tec Rep 1
Dilution Hi-C on T47D with HindIII
File
Alignments (bam)
4DNFIA5D3OBV
117.35m
16.121%
14.277%
2.837%
0.002%
0.231%
Experiment
4DNEX7X3XBWY
Bio Rep 2, Tec Rep 1
Dilution Hi-C on T47D with HindIII
File
Alignments (bam)
4DNFIT91DQUA
130.35m
15.815%
14.414%
2.949%
0.002%
0.254%