ExperimentSetReplicate

ExperimentSet4DNES2LXO15V
released
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Replicates of ATAC-seq on RUES2 stem cells differentiated to mesoderm

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXT76YJHV
Bio Rep 1, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIJGQE5V2
27.54%
0.97
0.97
26.16m
Experiment
4DNEXE5EGYFU
Bio Rep 2, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIJYGZ63R
37.33%
0.97
0.97
31.28m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNES2LXO15V
Multiple Experiments
File
Peaks (bigbed)
4DNFIJ5DO85M
216.22k
1.03
1.24
0.3