ExperimentSetReplicate

ExperimentSet4DNES2M5JIGV
released
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in situ Hi-C on H1-hESC (Tier 1) with DpnII

   July 13th, 2017 at 2:23pm
Source Publication
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, et al., Molecular cell 2020

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2M5JIGV
Multiple Experiments
File
Contact List-combined (pairs)
4DNFITU7K8VQ
2.53 billion
30.312%
16.691%
52.997%
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFIINYRY8H
1.32 billion
30.587%
16.703%
52.71%
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFILR6CKEJ
1.21 billion
30.012%
16.678%
53.31%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES2M5JIGV
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI6HDY7WZ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXENKINA2
Bio Rep 1, Tec Rep 1
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Alignments (bam)
4DNFIN6ZI1S4
3.17 billion
17.846%
22.328%
18.172%
0.007%
0.185%
Experiment
4DNEXZJZ5EBZ
Bio Rep 1, Tec Rep 2
in situ Hi-C on H1-hESC (Tier 1) with DpnII
File
Alignments (bam)
4DNFIQP64RT3
3.19 billion
18.173%
22.216%
21.79%
0.007%
0.172%