ExperimentSetReplicate

ExperimentSet4DNES2R6PUEK
released
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Hi-C on HFFc6 (Tier 1) with DpnII

   October 24th, 2017 at 6:18pm
Source Publication
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, et al., Molecular cell 2020

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFFc6 (Tier 1)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2R6PUEK
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIJEOJ221
2.93 billion
46.006%
22.651%
31.343%
Experiment
4DNEX7POCO84
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFFc6 (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFIAIBSEAG
1.43 billion
47.893%
23.117%
28.991%
Experiment
4DNEXRAEERUF
Bio Rep 2, Tec Rep 1
in situ Hi-C on HFFc6 (Tier 1) with DpnII
File
Contact List-replicate (pairs)
4DNFI7HPMW1O
1.5 billion
44.207%
22.208%
33.585%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES2R6PUEK
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIB59T7NN
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX7POCO84
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFFc6 (Tier 1) with DpnII
File
Alignments (bam)
4DNFI1KESQKT
3.2 billion
17.892%
22.589%
14.885%
0.009%
0.104%
Experiment
4DNEXRAEERUF
Bio Rep 2, Tec Rep 1
in situ Hi-C on HFFc6 (Tier 1) with DpnII
File
Alignments (bam)
4DNFIP7BSJKR
3.28 billion
17.809%
22.446%
14.044%
0.007%
0.132%