ExperimentSetReplicate

ExperimentSet4DNES2X7ULBN
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RNA FISH of Hbbb1 intronic regions in G1E-ER4 cells differentiated for 24 hours treated for 60min with 250nM JQ1

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:7:103826534-103827928 mouse region
Sample Image 
hbb-b1 probe with DAPI, +JQ1 treatment Note: no raw files included with dataset
View Image Item
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:7:103826534-103827928 mouse region targeted by Alexa Fluor 594-labeled custom oligos

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXTQHVNIG
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIDSR1SJA
csv
12.1 kB
File
4DNFIFRHLWNI
coordinates (csv)
2.16 kB
Experiment
4DNEX435UEUX
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIHG5JL7G
csv
30.16 kB
File
4DNFIV6EAR1D
coordinates (csv)
6.48 kB
Experiment
4DNEX9FWLQLV
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIS1UUVE6
csv
26.04 kB
File
4DNFI46VXI22
coordinates (csv)
3.42 kB