ExperimentSet4DNES2Y6YG9E
released
August 13th, 2020 at 6:00pm
Source Publication
CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Huang H, Zhu Q, et al., Nature genetics 2021
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
stem cells
Experiment Type(s)
Modification Type
RMCE
Treatment Type
None
Assay Details
Enzyme: MboI
10 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXH1FXQ4J
Bio Rep 1, Tec Rep 1
in situ Hi-C on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE with MboIExperiment
4DNEXO364N8H
Bio Rep 2, Tec Rep 1
in situ Hi-C on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE with MboIExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXH1FXQ4J
Bio Rep 1, Tec Rep 1
in situ Hi-C on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE with MboIExperiment
4DNEXO364N8H
Bio Rep 2, Tec Rep 1
in situ Hi-C on F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE with MboI