ExperimentSetReplicate

ExperimentSet4DNES3HQPSLM
released
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Replicates of dilution Hi-C on GM18522

   March 29th, 2019 at 10:51pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM18522
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES3HQPSLM
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIV4D6W74
292.44m
46.55%
21.886%
31.564%
Experiment
4DNEX1HYWC6B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18522 with HindIII
File
Contact List-replicate (pairs)
4DNFI8DS2YUS
152.53m
46.418%
22.86%
30.722%
Experiment
4DNEXHIL66E1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18522 with HindIII
File
Contact List-replicate (pairs)
4DNFI1PR636S
139.91m
46.694%
20.825%
32.482%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES3HQPSLM
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI2Y6GTWP
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1HYWC6B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on GM18522 with HindIII
File
Alignments (bam)
4DNFISDRLDNH
259.82m
16.703%
7.852%
11.11%
5.628%
0.354%
Experiment
4DNEXHIL66E1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on GM18522 with HindIII
File
Alignments (bam)
4DNFIIMQDDO4
211.09m
12.208%
8.186%
9.379%
3.944%
0.451%