ExperimentSetReplicate

ExperimentSet4DNES3IOYG74
released

Replicates of RNA-seq experiments on H1-hESC (Tier 1)

   November 18th, 2021 at 6:27pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXGP4KT5Z
Bio Rep 1, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Read Positions (bam)
4DNFIQL6SGRD
71.55m
56.66m
Experiment
4DNEXXH8HOOQ
Bio Rep 2, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Read Positions (bam)
4DNFIOY1CD4O
84.66m
67.68m
Experiment
4DNEXCT8W39T
Bio Rep 3, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Read Positions (bam)
4DNFI1OSX4YR
62.34m
49.8m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXGP4KT5Z
Bio Rep 1, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Gene Expression (tsv)
4DNFI8NRJGNY
43.89m
199.26k
Experiment
4DNEXXH8HOOQ
Bio Rep 2, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Gene Expression (tsv)
4DNFIXN6KBV6
48.36m
211.02k
Experiment
4DNEXCT8W39T
Bio Rep 3, Tec Rep 1
RNA-seq on H1-hESC (Tier 1)
File
Gene Expression (tsv)
4DNFIFJ93NKG
39.31m
165.54k