ExperimentSetReplicate

ExperimentSet4DNES49IRGRY
released
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Replicates of in situ DNase Hi-C on CRISPR/cas9-modified Patski cells (Inv-Dxz4 clone a)

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
DNase Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES49IRGRY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2S641OK
105.12m
26.034%
59.299%
14.667%
Experiment
4DNEXYLI7G52
Bio Rep 1, Tec Rep 1
DNase Hi-C on Patski with DNaseI
File
Contact List-replicate (pairs)
4DNFIAIDD5SM
105.12m
26.034%
59.299%
14.667%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES49IRGRY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQFJR1L4
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYLI7G52
Bio Rep 1, Tec Rep 1
DNase Hi-C on Patski with DNaseI
File
Alignments (bam)
4DNFI8DPJ9VA
462.65m
10.224%
9.905%
13.62%
43.529%
0.038%