ExperimentSetReplicate

ExperimentSet4DNES4ABKY9M
released
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HiC experiment done on astrocyte of the spinal cord (HA-sp).

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
astrocyte of the spinal cord
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4ABKY9M
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIA1SQZR5
164.3m
48.515%
21.963%
29.522%
Experiment
4DNEXSPRTURV
Bio Rep 2, Tec Rep 1
Dilution Hi-C on astrocyte of the spinal cord with HindIII
File
Contact List-replicate (pairs)
4DNFI7TR3V8M
89.97m
46.905%
22.844%
30.25%
Experiment
4DNEXQ4ZCIFU
Bio Rep 1, Tec Rep 1
Dilution Hi-C on astrocyte of the spinal cord with HindIII
File
Contact List-replicate (pairs)
4DNFI5463BGB
74.33m
50.463%
20.898%
28.64%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4ABKY9M
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMKLH6KM
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXSPRTURV
Bio Rep 2, Tec Rep 1
Dilution Hi-C on astrocyte of the spinal cord with HindIII
File
Alignments (bam)
4DNFITCD568I
152.26m
25.252%
12.713%
2.946%
0.001%
0.095%
Experiment
4DNEXQ4ZCIFU
Bio Rep 1, Tec Rep 1
Dilution Hi-C on astrocyte of the spinal cord with HindIII
File
Alignments (bam)
4DNFIVOMQVTQ
128.16m
27.448%
12.21%
2.342%
0.001%
0.095%