ExperimentSetReplicate

ExperimentSet4DNES4G1HPQC
released

HiC on WT ZF sperm

   June 18th, 2020 at 2:33pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
whole organisms
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4G1HPQC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFFBCFKN
103.37m
43.597%
13.343%
43.06%
Experiment
4DNEXXRD6JTM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Contact List-replicate (pairs)
4DNFIVY13VVV
47.25m
43.471%
13.504%
43.024%
Experiment
4DNEXKNKUZZ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Contact List-replicate (pairs)
4DNFIO9WHR8G
56.12m
43.704%
13.207%
43.09%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4G1HPQC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITHB7HKC
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXXRD6JTM
Bio Rep 1, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Alignments (bam)
4DNFI75K59OT
185.23m
42.784%
11.315%
3.86%
16.531%
0.634%
Experiment
4DNEXKNKUZZ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on Zebrafish Embryo with MboI
File
Alignments (bam)
4DNFIGC8K2SF
175.53m
26.969%
13.311%
4.564%
23.187%
0.778%