ExperimentSetReplicate

ExperimentSet4DNES4GSP9S4
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Dilution Hi-C experiment on HG00512

   April 28th, 2017 at 5:46pm
Source Publication
Common DNA sequence variation influences 3-dimensional conformation of the human genome.
Gorkin DU, Qiu Y, et al., Genome biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HG00512
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4GSP9S4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI91AL21C
313.64m
33.593%
20.422%
45.985%
Experiment
4DNEXQT9BRMS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00512 with HindIII
File
Contact List-replicate (pairs)
4DNFIPHSDRFL
168.08m
28.12%
21.176%
50.704%
Experiment
4DNEXM7Q2UE8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00512 with HindIII
File
Contact List-replicate (pairs)
4DNFIU9WBSFC
145.56m
39.913%
19.551%
40.536%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4GSP9S4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIM8SM3SD
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQT9BRMS
Bio Rep 1, Tec Rep 1
Dilution Hi-C on HG00512 with HindIII
File
Alignments (bam)
4DNFIREOOAQ1
252.14m
13.878%
8.623%
4.99%
5.849%
0.49%
Experiment
4DNEXM7Q2UE8
Bio Rep 2, Tec Rep 1
Dilution Hi-C on HG00512 with HindIII
File
Alignments (bam)
4DNFIDCZK3B1
201.55m
7.221%
9.778%
7.047%
3.735%
0.599%