ExperimentSetReplicate

ExperimentSet4DNES4YC122Q
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RNA FISH of Prdx2 and Slc25a37 intronic regions on 24h differentiated cells treated for 60min with 100nM flavopiridol

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXANFA7O9
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI7UPAHEP
coordinates (csv)
9.68 kB
File
4DNFI38OY5LX
csv
36.81 kB
File
4DNFICXO4C79
coordinates (csv)
4.61 kB
File
4DNFIRXNWETZ
csv
23.53 kB
Experiment
4DNEXA3JZRWE
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI6J4Z372
coordinates (csv)
8.48 kB
File
4DNFIRL8O35W
csv
37.57 kB
File
4DNFIUSYUJZD
coordinates (csv)
4.71 kB
File
4DNFIYYWR11Q
csv
21.74 kB
Experiment
4DNEXILFS1IS
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIP8XADQV
coordinates (csv)
7.32 kB
File
4DNFII8FF5UT
csv
30.08 kB
File
4DNFITR5PU5Q
coordinates (csv)
4.72 kB
File
4DNFINI6RIHC
csv
21.41 kB