ExperimentSetReplicate

ExperimentSet4DNES5R3O24W
released
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in situ Hi-C experiment on E14 cells neural progenitor differentiation 36 hours time point

   September 1st, 2017 at 9:51pm
Source Publication
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.
Yan J, Chen SA, et al., Cell research 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES5R3O24W
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIZ3R6HD9
576.23m
56.087%
29.117%
14.796%
Experiment
4DNEXOF1VUK3
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with MboI
File
Contact List-replicate (pairs)
4DNFIHTXJC8B
576.23m
56.087%
29.117%
14.796%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES5R3O24W
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIOPKGMBL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXOF1VUK3
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with MboI
File
Alignments (bam)
4DNFIN93AZP1
1.04 billion
9.896%
24.429%
9.857%
0.421%
0.118%