ExperimentSetReplicate

ExperimentSet4DNES6G787KF
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Replicates of in situ Dnase Hi-C on RUES2 stem cells differentiated to cardiac progenitors

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6G787KF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFCQQAGT
293.19m
24.829%
46.933%
28.239%
Experiment
4DNEXRGPHY4P
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Contact List-replicate (pairs)
4DNFIV57K7CS
166.68m
21.43%
46.578%
31.992%
Experiment
4DNEXGZH6KEK
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Contact List-replicate (pairs)
4DNFI1I3NFHG
126.5m
29.307%
47.4%
23.293%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6G787KF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI45RK3ZJ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXRGPHY4P
Bio Rep 1, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Alignments (bam)
4DNFI61VMVT4
239.18m
9.091%
15.019%
1.73%
4.469%
0.307%
Experiment
4DNEXGZH6KEK
Bio Rep 2, Tec Rep 1
DNase Hi-C on RUES2 with DNaseI
File
Alignments (bam)
4DNFILEARN1E
178.55m
7.823%
15.759%
2.63%
2.939%
0.273%