ExperimentSetReplicate

ExperimentSet4DNES6XCH444
released
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RNA FISH of Slc25a37 intronic and exonic regions in e3-deleted G1-ER4 cells from Jian Xu lab differentiated for 24 hours

   September 14th, 2018 at 4:58pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E3
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:14:69241851-69285103 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:14:69241851-69285103 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:14:69241851-69285103 mouse region targeted by Cy3-labeled custom oligos

9 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXWJ8RMKC
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E3
File
4DNFIB4OCVNQ
csv
1.57 kB
File
4DNFIILG1SOJ
csv
13.64 kB
File
4DNFIKE7XVRR
coordinates (csv)
3.38 kB
Experiment
4DNEX58J8BP5
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E3
File
4DNFISLJ5K1B
csv
1.26 kB
File
4DNFIGTPIBT5
csv
8.68 kB
File
4DNFI63Y6XBI
coordinates (csv)
1.87 kB
Experiment
4DNEXK9IPG32
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion, Crispr deletion of Slc25a37 enhancer E3
File
4DNFIEP9QCKG
csv
1.32 kB
File
4DNFI1BJXR94
csv
9.12 kB
File
4DNFILYU96O9
coordinates (csv)
1.76 kB