ExperimentSetReplicate

ExperimentSet4DNES6YMW2WC
released
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dilution Hi-C on CH12LX with HindIII and bio-dCTP

   April 9th, 2017 at 5:35pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12.LX
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES6YMW2WC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUNWDW7H
111.5m
24.914%
33.552%
41.533%
Experiment
4DNEXWL6AZ1B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on CH12.LX with HindIII
File
Contact List-replicate (pairs)
4DNFIDQHUP2X
73.75m
27.076%
38.232%
34.692%
Experiment
4DNEXZKNI8A6
Bio Rep 2, Tec Rep 1
Dilution Hi-C on CH12.LX with HindIII
File
Contact List-replicate (pairs)
4DNFIFUA1MEO
37.75m
20.692%
24.41%
54.898%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES6YMW2WC
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIWSPOUOW
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXWL6AZ1B
Bio Rep 1, Tec Rep 1
Dilution Hi-C on CH12.LX with HindIII
File
Alignments (bam)
4DNFIMYEBMKQ
97.43m
4.047%
17.879%
0.704%
1.679%
0.141%
Experiment
4DNEXZKNI8A6
Bio Rep 2, Tec Rep 1
Dilution Hi-C on CH12.LX with HindIII
File
Alignments (bam)
4DNFII4HZ6DV
52.82m
4.557%
21.067%
0.641%
2.252%
0.218%