ExperimentSetReplicate

ExperimentSet4DNES7BN9OCB
released

Promoter Capture C on F121-6 cells

   July 26th, 2018 at 3:56pm
Source Publication

Note on Processed Files  


Some annotated bam and pairs files generated in this Experiment Set may contain distinct reads that share the same identifier. This was caused by merging fastq files with integer identifiers (eg. @1, @2) during processing.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7BN9OCB
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI9H5B7J4
189.27m
26.529%
65.841%
7.63%
Experiment
4DNEXDNEIE68
Bio Rep 1, Tec Rep 1
Capture Hi-C on F121-6-CASTx129 with HindIII
File
Contact List-replicate (pairs)
4DNFIKK3KKFW
96.01m
36.976%
55.825%
7.2%
Experiment
4DNEX49TP1YT
Bio Rep 2, Tec Rep 1
Capture Hi-C on F121-6-CASTx129 with HindIII
File
Contact List-replicate (pairs)
4DNFICANO3LG
93.25m
15.772%
76.154%
8.074%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7BN9OCB
Multiple Experiments
File
Contact Matrix (mcool)
4DNFICF9PA9C
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXDNEIE68
Bio Rep 1, Tec Rep 1
Capture Hi-C on F121-6-CASTx129 with HindIII
File
Alignments (bam)
4DNFIYFX56VS
183.83m
12.634%
9.086%
22.354%
3.695%
0.104%
Experiment
4DNEX49TP1YT
Bio Rep 2, Tec Rep 1
Capture Hi-C on F121-6-CASTx129 with HindIII
File
Alignments (bam)
4DNFI9N8VDQ7
212.94m
5.473%
9.521%
39.511%
1.703%
0.107%