ExperimentSetReplicate

ExperimentSet4DNES7C6LBWI
released
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in situ Hi-C on CH12

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

17 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7C6LBWI
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1519ZZL
915.29m
55.262%
23.888%
20.85%
Experiment
4DNEXQO1WLDM
Bio Rep 1, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFINBBSQLQ
151.1m
55.147%
23.671%
21.182%
Experiment
4DNEX3AI9WBN
Bio Rep 2, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFIDISBY6F
263.91m
57.857%
20.41%
21.733%
Experiment
4DNEX2H267Y1
Bio Rep 3, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFI4F9SJWN
206.83m
58.248%
21.181%
20.571%
Experiment
4DNEX8H5J2FE
Bio Rep 4, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFIHMAQJ22
104.9m
50.814%
23.777%
25.408%
Experiment
4DNEXIH9RYFN
Bio Rep 5, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFIPAU2ITC
109.54m
50.921%
31.695%
17.384%
Experiment
4DNEXEA7T7ND
Bio Rep 6, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Contact List-replicate (pairs)
4DNFIG57E6OZ
79.01m
50.921%
32.325%
16.755%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7C6LBWI
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIASQYF5S
250000
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQO1WLDM
Bio Rep 1, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFIS38TKL7
208.57m
6.256%
14.839%
2.057%
4.401%
0.124%
Experiment
4DNEX3AI9WBN
Bio Rep 2, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFIN6C2QWI
364.81m
5.913%
15.263%
2.272%
4.211%
0.15%
Experiment
4DNEX2H267Y1
Bio Rep 3, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFI1PY7OYG
284.66m
6.248%
14.666%
2.031%
4.397%
0.133%
Experiment
4DNEX8H5J2FE
Bio Rep 4, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFIOD8OOFV
144.99m
6.836%
14.672%
2.197%
3.946%
0.141%
Experiment
4DNEXIH9RYFN
Bio Rep 5, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFIZ3AM77Y
150.49m
6.144%
15.409%
1.956%
3.702%
0.118%
Experiment
4DNEXEA7T7ND
Bio Rep 6, Tec Rep 1
in situ Hi-C on CH12 with MboI
File
Alignments (bam)
4DNFIWQ9ICWN
109.17m
6.125%
15.629%
2.12%
3.755%
0.119%