ExperimentSetReplicate

ExperimentSet4DNES7DFQZLI
released
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HiC experiment done on NCI-H460

   May 5th, 2017 at 6:43pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
NCI-H460
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7DFQZLI
Multiple Experiments
File
Contact List-combined (pairs)
4DNFII461Q5Z
186.86m
34.549%
22.043%
43.408%
Experiment
4DNEXCYOTRZ8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on NCI-H460 with HindIII
File
Contact List-replicate (pairs)
4DNFIRLIHSBS
100.71m
38.096%
19.506%
42.398%
Experiment
4DNEXECZBL99
Bio Rep 2, Tec Rep 1
Dilution Hi-C on NCI-H460 with HindIII
File
Contact List-replicate (pairs)
4DNFI7A95OFH
86.15m
30.402%
25.008%
44.59%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7DFQZLI
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIGBYT93X
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXCYOTRZ8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on NCI-H460 with HindIII
File
Alignments (bam)
4DNFIGALVOU9
152.42m
13.13%
15.301%
5.493%
0.001%
0.182%
Experiment
4DNEXECZBL99
Bio Rep 2, Tec Rep 1
Dilution Hi-C on NCI-H460 with HindIII
File
Alignments (bam)
4DNFILMBIVFQ
160.78m
13.745%
15.429%
17.246%
0.001%
0.224%