ExperimentSetReplicate

ExperimentSet4DNES7L8Z2KV
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in situ Hi-C experiment on DKO cells neural progenitor differentiation 60 hours time point

   September 1st, 2017 at 9:51pm
Source Publication
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.
Yan J, Chen SA, et al., Cell research 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES7L8Z2KV
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIF6UEOC7
693.63m
59.116%
18.486%
22.398%
Experiment
4DNEXKGB5PMS
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Contact List-replicate (pairs)
4DNFIQXWVVB6
693.63m
59.116%
18.486%
22.398%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES7L8Z2KV
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIX524X88
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKGB5PMS
Bio Rep 1, Tec Rep 1
in situ Hi-C on ES-E14 with Flo/Flox deletion of Mll3 and Mll4 genes with MboI
File
Alignments (bam)
4DNFI8SFPK6F
1.15 billion
12.693%
23.352%
3.471%
0.191%
0.087%