ExperimentSetReplicate

ExperimentSet4DNES8B3R3P8
released
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iMARGI on human embryonic stem cells (H1) treated with flavopiridol - FL

   July 1st, 2021 at 5:48pm
Source Publication
Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells
Calandrelli R, Wen X, et al., bioRxiv 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
MARGI
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: AluI

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>200000)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES8B3R3P8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEWRPAGX
209.02m
9.115%
44.336%
46.549%
Experiment
4DNEXHOPXSVM
Bio Rep 1, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFI9OEYWLS
145.55m
10.734%
43.06%
46.205%
Experiment
4DNEXWUS9U4F
Bio Rep 2, Tec Rep 1
MARGI on H1-hESC (Tier 1)
File
Contact List-replicate (pairs)
4DNFI48EPL5E
63.46m
5.401%
47.261%
47.338%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8B3R3P8
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIEQOA3TL
1000; 2000; 5000; 10000; 25000; 50000; 100000; 250000; 500000; 1000000; 2500000; 5000000; 10000000