ExperimentSetReplicate

ExperimentSet4DNES8BLXVP5
released
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Replicates of in situ Dnase Hi-C on WTC11 human induced pluripotent stem cells differentiated to mesoderm

   November 18th, 2018 at 6:54pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
WTC-11 (Tier 1)
Experiment Type(s) 
DNase Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DNaseI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES8BLXVP5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOKU4FVK
141.33m
33.675%
42.988%
23.337%
Experiment
4DNEXGNEOZPK
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIW25CRL8
65.57m
35.32%
41.972%
22.708%
Experiment
4DNEXX4FXLWH
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Contact List-replicate (pairs)
4DNFIQIRMZFB
75.76m
32.252%
43.867%
23.881%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8BLXVP5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI1SD65UM
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGNEOZPK
Bio Rep 1, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFIMX46QF3
119.4m
20.794%
13.09%
8.003%
3.197%
0.121%
Experiment
4DNEXX4FXLWH
Bio Rep 2, Tec Rep 1
DNase Hi-C on WTC-11 (Tier 1) with DNaseI
File
Alignments (bam)
4DNFIMI2QPGS
122.59m
13.216%
15.238%
6.311%
3.435%
0.175%