ExperimentSetReplicate

ExperimentSet4DNES8J78WV2
released
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Hi-C on HFF cells grown on plate with HindIII

   September 7th, 2017 at 8:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES8J78WV2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5OYZND2
193.79m
60.919%
24.673%
14.408%
Experiment
4DNEXQ6NUVKG
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with HindIII
File
Contact List-replicate (pairs)
4DNFIJAKH2X3
193.79m
60.919%
24.673%
14.408%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8J78WV2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIPNC6K5B
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQ6NUVKG
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with HindIII
File
Alignments (bam)
4DNFINTAW8HY
338.07m
13.153%
7.348%
17.466%
4.711%
0.089%