ExperimentSetReplicate

ExperimentSet4DNES8MJ5EYG
released
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CTCC experiments with in vitro crosslinking without restriction digestion with RNaseA on GM12878 cells

   January 25th, 2022 at 4:56pm
Source Publication
Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal interactions
Xu J, Kumar S, et al., bioRxiv 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878 (Tier 1)
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES8MJ5EYG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINTQSL95
56.68m
6.328%
75.585%
18.087%
Experiment
4DNEXMYS1NFU
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1)
File
Contact List-replicate (pairs)
4DNFIIQJR51T
56.68m
6.328%
75.585%
18.087%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8MJ5EYG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZ6XI3DV
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMYS1NFU
Bio Rep 1, Tec Rep 1
TCC on GM12878 (Tier 1)
File
Alignments (bam)
4DNFIRNPMEKA
115.67m
30.312%
7.382%
3.892%
9.412%
0.628%