ExperimentSetReplicate

ExperimentSet4DNES8ZUV5CQ
released
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HiC experiment done on G401

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
G401
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES8ZUV5CQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFILA6HZAY
187.93m
52.598%
27.806%
19.595%
Experiment
4DNEXIQ7WY4X
Bio Rep 1, Tec Rep 1
Dilution Hi-C on G401 with HindIII
File
Contact List-replicate (pairs)
4DNFIU832CGU
88.99m
52.933%
28.201%
18.866%
Experiment
4DNEXFFYE93E
Bio Rep 2, Tec Rep 1
Dilution Hi-C on G401 with HindIII
File
Contact List-replicate (pairs)
4DNFIQZ5VUS8
98.94m
52.297%
27.451%
20.251%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES8ZUV5CQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5K8L94P
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXIQ7WY4X
Bio Rep 1, Tec Rep 1
Dilution Hi-C on G401 with HindIII
File
Alignments (bam)
4DNFIIGYNWMJ
171.47m
14.453%
14.121%
19.53%
0.001%
0.097%
Experiment
4DNEXFFYE93E
Bio Rep 2, Tec Rep 1
Dilution Hi-C on G401 with HindIII
File
Alignments (bam)
4DNFIJ9ERMXK
169.45m
12.373%
7.662%
15.618%
5.957%
0.133%