ExperimentSetReplicate

ExperimentSet4DNES98CI6GV
released
View JSON

HiC experiment done on A549

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
A549
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES98CI6GV
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIGDS8FEX
163.77m
35.995%
18.759%
45.247%
Experiment
4DNEXVP5U9YT
Bio Rep 1, Tec Rep 1
Dilution Hi-C on A549 with HindIII
File
Contact List-replicate (pairs)
4DNFI3G7ACRU
84.19m
33.453%
18.44%
48.107%
Experiment
4DNEXX3SJOG9
Bio Rep 2, Tec Rep 1
Dilution Hi-C on A549 with HindIII
File
Contact List-replicate (pairs)
4DNFISGG3QI2
79.58m
38.684%
19.096%
42.22%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES98CI6GV
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIJYULXT7
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXVP5U9YT
Bio Rep 1, Tec Rep 1
Dilution Hi-C on A549 with HindIII
File
Alignments (bam)
4DNFIF3WVA21
130.31m
16.795%
15.037%
3.558%
0.002%
0.246%
Experiment
4DNEXX3SJOG9
Bio Rep 2, Tec Rep 1
Dilution Hi-C on A549 with HindIII
File
Alignments (bam)
4DNFIJSALZWE
121.59m
16.326%
14.753%
3.465%
0.002%
0.242%