ExperimentSetReplicate

ExperimentSet4DNES9LEZXN7
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dilution Hi-C on DT40 cells in G2

   October 30th, 2018 at 2:37pm
Source Publication
A pathway for mitotic chromosome formation.
Gibcus JH, Samejima K, et al., Science (New York, N.Y.) 2018

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
G. gallus
Sample Type 
immortalized cells
Sample 
DT40 with random integration of X. laevis Cdk1, CDK1 disruption
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES9LEZXN7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI9MMNACV
150.49m
54.698%
29.293%
16.008%
Experiment
4DNEXJ6TU2BU
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIBLX876X
40.41m
55.197%
31.01%
13.793%
Experiment
4DNEXAP42UGL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Contact List-replicate (pairs)
4DNFIRQZT6FG
110.09m
54.516%
28.663%
16.821%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES9LEZXN7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIT479GDR
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXJ6TU2BU
Bio Rep 1, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFIMVKU3VJ
143.5m
23.987%
8.602%
39.25%
0.004%
0.346%
Experiment
4DNEXAP42UGL
Bio Rep 2, Tec Rep 1
Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII
File
Alignments (bam)
4DNFI3M6OPJ4
167.27m
12.89%
7.52%
9.556%
4.219%
0.436%