ExperimentSetReplicate

ExperimentSet4DNES9X112GZ
released
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Micro-C on HFF cells with 1% Formaldehyde and 3mM DSG crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES9X112GZ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI2T9UE49
191.35m
22.197%
68.413%
9.39%
Experiment
4DNEXPBOFI77
Bio Rep 1, Tec Rep 1
Micro-C on HFF-hTERT with MNase
File
Contact List-replicate (pairs)
4DNFIZQ8XSU7
191.35m
22.197%
68.413%
9.39%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES9X112GZ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIOH5BDRC
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPBOFI77
Bio Rep 1, Tec Rep 1
Micro-C on HFF-hTERT with MNase
File
Alignments (bam)
4DNFIB4G1A9K
287.09m
6.61%
22.95%
3.778%
0.01%
0.098%