ExperimentSetReplicate

ExperimentSet4DNESA645JZF
released
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Micro-C on HeLa-S3 (non synchronized) with 1% Formaldehyde crosslinking

   June 27th, 2020 at 6:56pm
Source Publication
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, et al., Nature methods 2021

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESA645JZF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIWPIKKFW
76.07m
8.306%
57.297%
34.397%
Experiment
4DNEXAL2NDFQ
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Contact List-replicate (pairs)
4DNFI9UM7XYK
76.07m
8.306%
57.297%
34.397%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESA645JZF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIMFEX6VG
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXAL2NDFQ
Bio Rep 1, Tec Rep 1
Micro-C on HeLa-S3 with MNase
File
Alignments (bam)
4DNFICU8ERGM
272.02m
4.125%
21.801%
46.1%
0.008%
0.057%