ExperimentSetReplicate

ExperimentSet4DNESAOU4AAQ
released
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TCC on uninduced control hepatocytes

   May 10th, 2018 at 6:37pm
Source Publication
Two independent modes of chromatin organization revealed by cohesin removal.
Schwarzer W, Abdennur N, et al., Nature 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
hepatocyte
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESAOU4AAQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQH7KU2L
136.32m
48.515%
31.905%
19.58%
Experiment
4DNEXN25ESPT
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFIT3MMU1S
73.31m
50.356%
30.001%
19.642%
Experiment
4DNEXQ3PS6HH
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFIGZZ9LOB
63.01m
46.372%
34.12%
19.508%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESAOU4AAQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIIW2JEZ8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXN25ESPT
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFIN92AY28
139.34m
20.075%
18.358%
8.279%
0.679%
0.085%
Experiment
4DNEXQ3PS6HH
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFIYSUPO3T
114.26m
21.692%
17.033%
5.372%
0.755%
0.082%