ExperimentSetReplicate

ExperimentSet4DNESAPF27TG
released

Hi-C on HFF cells grown on beads with MboI

   September 7th, 2017 at 8:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESAPF27TG
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI4EYPEYT
180.76m
46.732%
19.521%
33.748%
Experiment
4DNEX1OP4VCU
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with MboI
File
Contact List-replicate (pairs)
4DNFIS5PRTL5
180.76m
46.732%
19.521%
33.748%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESAPF27TG
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIK6HMOII
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1OP4VCU
Bio Rep 1, Tec Rep 1
in situ Hi-C on HFF-hTERT with MboI
File
Alignments (bam)
4DNFIDEKLQAD
374.8m
15.006%
24.295%
12.465%
0.006%
0.098%