ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESAZBS2PU
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 8th, 2018 at 1:10pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:18:34992711-35151964 region, GRCh38:18:40596626-40761745 region, GRCh38:18:41537838-41727804 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:18:34992711-35151964 region targeted by Cy5-labeled BAC
ch02
GRCh38:18:40596626-40761745 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:18:41537838-41727804 region targeted by Alexa Fluor 488-labeled BAC

3 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESAZBS2PU
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEX4CTCCW5
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIEIC1DWN
loci distances (txt)
77.68 kB
Experiment
4DNEXURRGG7H
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFI311YTG7
loci distances (txt)
200.9 kB
Experiment
File
File Type
File Size
Experiment
4DNEXTJASA7F
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
-
-
-