ExperimentSetReplicate

ExperimentSet4DNESC2DEQIJ
released
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HiC experiment done on HepG2.

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HepG2
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESC2DEQIJ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQ4G74OW
2.02 billion
37.602%
27.288%
35.111%
Experiment
4DNEXFPG8JQ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on HepG2 with DpnII
File
Contact List-replicate (pairs)
4DNFIMA6DZHF
1.13 billion
38.497%
28.052%
33.451%
Experiment
4DNEXDST6972
Bio Rep 1, Tec Rep 1
in situ Hi-C on HepG2 with DpnII
File
Contact List-replicate (pairs)
4DNFI3265LZT
892.6m
36.468%
26.321%
37.211%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESC2DEQIJ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIS6HAUPP
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXFPG8JQ4
Bio Rep 2, Tec Rep 1
in situ Hi-C on HepG2 with DpnII
File
Alignments (bam)
4DNFI5FJ4V1B
2.14 billion
14.098%
22.802%
10.218%
0.01%
0.45%
Experiment
4DNEXDST6972
Bio Rep 1, Tec Rep 1
in situ Hi-C on HepG2 with DpnII
File
Alignments (bam)
4DNFIO2SSGLF
1.63 billion
13.818%
23.945%
7.518%
0.007%
0.514%