ExperimentSetReplicate

ExperimentSet4DNESC5J3EIX
released
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HiC experiment done on SK-N-DZ

   May 5th, 2017 at 6:44pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
SK-N-DZ
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESC5J3EIX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFISUIRRB3
93.53m
8.745%
38.528%
52.727%
Experiment
4DNEX52Q4NSZ
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-DZ with HindIII
File
Contact List-replicate (pairs)
4DNFIJWAAHYH
93.53m
8.745%
38.528%
52.727%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESC5J3EIX
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI2T49EAG
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX52Q4NSZ
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-N-DZ with HindIII
File
Alignments (bam)
4DNFI7E7JFFM
138.39m
13.308%
17.129%
1.973%
0.004%
0.277%