ExperimentSetReplicate

ExperimentSet4DNESC9AQ3MU
released
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Replicates of ATAC-seq on RUES2 stem cells differentiated to cardiac progenitors

   January 5th, 2018 at 4:05pm
Source Publication
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory.
Bertero A, Fields PA, et al., Nature communications 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
RUES2
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

5 Processed Files

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXLLQK7GM
Bio Rep 1, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFIZPGHBNV
21.58%
0.98
0.98
27.26m
Experiment
4DNEXIX89R4K
Bio Rep 2, Tec Rep 1
ATAC-seq on RUES2
File
Read Positions (bed)
4DNFI9JTZWHR
39.36%
0.96
0.96
25.89m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESC9AQ3MU
Multiple Experiments
File
Peaks (bigbed)
4DNFIVWBX6WX
198.46k
1.06
1.09
0.26